Fix “getopts.pl can not be located in @INC” error in SSPACE_Standard_v3.0.pl

gaoch

2015-08-16

Categories: 旧文 WordPress博客 Tags: 原创教程 TUTORIAL 生物软件 BIO-SOFTWARE NGS perl SSPACE Ubuntu 错误

SSPACE是一个常用的Scaffolding软件.当你有新的测序数据时,你可以使用SSPACE将原有的contigs延长,scaffolding等.

在Ubuntu 14.04系统中运行该软件v3.0会出现错误.谷歌也没有发现好的解决方法,最终通过研究源代码,发现这是一个简单的问题,修订源代码之后,终于能够成功运行.

两处修订如下:

[cc lang=”perl”]
#~ require “getopts.pl”;
use Getopt::Std;
[/cc]

[cc lang=”perl”]
#~ &Getopts(‘m:o:v:p:k:a:z:s:b:n:l:x:T:g:r:S:’);
getopt(‘m:o:v:p:k:a:z:s:b:n:l:x:T:g:r:S:’);
[/cc]

作者简介

Chun-Hui Gao is a Research Associate at Huazhong Agricultural University.

重复使用

Text and figures are licensed under Creative Commons Attribution CC BY 4.0. The source code is licensed under MIT. The full source is available at https://github.com/yihui/hugo-prose.

欢迎修订

如果您发现本文里含有任何错误（包括错别字和标点符号），欢迎在本站的 GitHub 项目里提交修订意见。

引用本文

如果您使用了本文的内容，请按照以下方式引用：

gaoch (2015). Fix “getopts.pl can not be located in @INC” error in SSPACE_Standard_v3.0.pl. BIO-SPRING. /post/2015/08/16/2015-08-16-sspace-getopts-error/

BibTeX citation

@misc{
  title = "Fix “getopts.pl can not be located in @INC” error in SSPACE_Standard_v3.0.pl",
  author = "gaoch",
  year = "2015",
  journal = "BIO-SPRING",
  note = "/post/2015/08/16/2015-08-16-sspace-getopts-error/"
}